PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT03865

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 189aa MW: 20866.8 Da PI: 4.7582

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT03865	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.6	4.5e-43	33	131	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da++s+vyeA+ar+rdPvyG++g i +lq+q+++l+aela+++ OIT03865 33 PCAACKILRRRCVDKCVLAPYFPPTEPLKFTIAHRVFGASNIIKMLQELPEDQRADAVNSMVYEANARIRDPVYGCAGAICQLQKQISELQAELAKAQV 131 7**********************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence
MECSDKTSGT SSSSSAGMMT PPPSPPWPVI LTPCAACKIL RRRCVDKCVL APYFPPTEPL 60 KFTIAHRVFG ASNIIKMLQE LPEDQRADAV NSMVYEANAR IRDPVYGCAG AICQLQKQIS 120 ELQAELAKAQ VEMLNVQCQN TNLVSLICRE MSQNQENNGS VCPDQQTYGN TSLFLDDNSV 180 YASWEPLWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-74	LBD family protein

Link Out ? help Back to Top
Ensembl	OIT03865