PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT03925

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 436aa MW: 47978.5 Da PI: 7.2506

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT03925	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.6	2.5e-17	29	76	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd l d+++++G g+W+++ ++ g+ R++k+c++rw ++l OIT03925 29 KGPWTKEEDAVLMDYIRKHGEGNWSAVQKHSGLARCGKSCRLRWSNHL 76 79*******************************************996 PP
2	Myb_DNA-binding	39.6	1.2e-12	82	125	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+ T eE ++ +++++ G++ W+ Ia++++ gRt++++k++w++ OIT03925 82 KGALTLEEVRRINELHAKIGNK-WAQIAAKLP-GRTDNEIKNYWNT 125 67889***************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MTSKVGVGSP SVEEASSGGN IRGGVPLKKG PWTKEEDAVL MDYIRKHGEG NWSAVQKHSG 60 LARCGKSCRL RWSNHLRPDL KKGALTLEEV RRINELHAKI GNKWAQIAAK LPGRTDNEIK 120 NYWNTRIKKQ QRVGLQMYPP DICFQAFSEN KQNKELGIFS SANSHPDFLP IYGFESPTVE 180 FKKLEPSQQL YPRALVNIAA SSFFDIPATS LLAQALSSSN TCSGLSTMHP SKRIRGSESW 240 FFGMTDDLFQ ACHQYQNNGS LFAQSLGFSS SYTHNLTSDH HPSFSGEIPG SHAPLNGNSS 300 SSEPKWAKKL ELPSLQIRMA NWGSPSPLPS LESFDTLIQY PPNEHADSGS LSPRNSGLLD 360 AVLYESQTSK ASKHSSHQET SCDVVDDSCP DLQETQWGTY SNPISPLGHS AASVLSEYTP 420 TEVHWMSPPV NSDGGW

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MTSKVGVGSP SVEEASSGGN IRGGVPLKKG PWTKEEDAVL MDYIRKHGEG NWSAVQKHSG  60
LARCGKSCRL RWSNHLRPDL KKGALTLEEV RRINELHAKI GNKWAQIAAK LPGRTDNEIK  120
NYWNTRIKKQ QRVGLQMYPP DICFQAFSEN KQNKELGIFS SANSHPDFLP IYGFESPTVE  180
FKKLEPSQQL YPRALVNIAA SSFFDIPATS LLAQALSSSN TCSGLSTMHP SKRIRGSESW  240
FFGMTDDLFQ ACHQYQNNGS LFAQSLGFSS SYTHNLTSDH HPSFSGEIPG SHAPLNGNSS  300
SSEPKWAKKL ELPSLQIRMA NWGSPSPLPS LESFDTLIQY PPNEHADSGS LSPRNSGLLD  360
AVLYESQTSK ASKHSSHQET SCDVVDDSCP DLQETQWGTY SNPISPLGHS AASVLSEYTP  420
TEVHWMSPPV NSDGGW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11440.1	4e-76	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT03925