PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT04249

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 273aa MW: 30057.1 Da PI: 8.4911

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT04249	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.3	7.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv++++ +G g+W++ ++ g+ R++k+c++rw +yl OIT04249 14 KGAWTKEEDQRLVNYIHSHGEGCWRSLPKAAGLQRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	59	1e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W+ Ia +++ gRt++++k++w+++ OIT04249 67 RGNFTEEEDELIIKLHSLLGNK-WSVIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence
MGRSPCCEKA HTNKGAWTKE EDQRLVNYIH SHGEGCWRSL PKAAGLQRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIK LHSLLGNKWS VIAGRLPGRT DNEIKNYWNT HIKRKLISRG 120 LDPHTHQPLN TAATTAATAT ATKNICLDFR NTSVAATPLS LNDENPTNYS SSLEEETKCS 180 SSTTEERPPP LEPAAAPVAA TQKSSGEVMI NLELSIGLPF QAMVAQRRPT AAAPVAATAL 240 VEKAVCLCWQ IGSQSGQQFC GKCQTTNGFY RCC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	9e-86	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT04249