PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT04332

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 387aa MW: 41342.6 Da PI: 9.1874

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT04332	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	138.6	1.8e-43	86	161	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegCeadls++k y++rhkvC +hsk+pvv+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ OIT04332 86 RCQVEGCEADLSDVKAYYSRHKVCATHSKSPVVIVAGLEQRFCQQCSRFHRLPEFDQGKRSCRRRLAGHNERRRKP 161 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MNGLSKSEME LLASASSSTS TTSTSPDSPP NTLKFGQKIY FEHVGPQHLK SATGSSSSPP 60 VTGTPAPAMS KKVRGGGVVQ ARQPPRCQVE GCEADLSDVK AYYSRHKVCA THSKSPVVIV 120 AGLEQRFCQQ CSRFHRLPEF DQGKRSCRRR LAGHNERRRK PPPGSLLSNR YGSLSSSIFE 180 NNGRSGSFLL DFTAYPNLTG GAWPNTRSSE RGWDNQSTAS VKLLQSHWLN SSENPTSDLV 240 LQGSVARGAN YSGPGIIPSG NCFSGVSDSS GALSLLSNEP WGSRNQSSSL GVNGLVNTDG 300 GHTVQPSGSH AAPVNHYSGP LWGFKGNEAS SSSHAIPPDL GLGHISHHAV NQYSAELGMA 360 QHSGRQYMEL EHSKGYDSSV QNVHWTL

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MNGLSKSEME LLASASSSTS TTSTSPDSPP NTLKFGQKIY FEHVGPQHLK SATGSSSSPP  60
VTGTPAPAMS KKVRGGGVVQ ARQPPRCQVE GCEADLSDVK AYYSRHKVCA THSKSPVVIV  120
AGLEQRFCQQ CSRFHRLPEF DQGKRSCRRR LAGHNERRRK PPPGSLLSNR YGSLSSSIFE  180
NNGRSGSFLL DFTAYPNLTG GAWPNTRSSE RGWDNQSTAS VKLLQSHWLN SSENPTSDLV  240
LQGSVARGAN YSGPGIIPSG NCFSGVSDSS GALSLLSNEP WGSRNQSSSL GVNGLVNTDG  300
GHTVQPSGSH AAPVNHYSGP LWGFKGNEAS SSSHAIPPDL GLGHISHHAV NQYSAELGMA  360
QHSGRQYMEL EHSKGYDSSV QNVHWTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	6e-63	SBP family protein

Link Out ? help Back to Top
Ensembl	OIT04332