PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT04499

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 213aa MW: 24427.1 Da PI: 10.0753

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT04499	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00045	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k F++ L H +H OIT04499 89 YKCETCSKFFRSYQALGGHVASH 111 9***********99999888877 PP
2	zf-C2H2	14.3	0.00012	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+++Fs+ L H r+H OIT04499 135 HECPVCSRVFSSGQALGGHKRSH 157 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence
MWRIKKSRIS YTHYMSNYDY RHVAYAESCA YASARVPSSE PVSSIWDTSP EEDVAYCLMM 60 LSRDKWRKKE KEKDQKQDKV TKTRTRGKYK CETCSKFFRS YQALGGHVAS HKKIKVSTNK 120 TSETVETKYK EVKIHECPVC SRVFSSGQAL GGHKRSHGIT STKIKLSRID RTMIDLNVPA 180 SLEDAEIITQ IEFSSVSDAK FVNPIKPLKV KLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	3e-45	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT04499