PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT04564

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 266aa MW: 30128.1 Da PI: 9.0432

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT04564	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+ ++k +G g+W++ ++ g+ R++k+c++rw +yl OIT04564 14 KGAWTKEEDERLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	58.9	1.1e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++ OIT04564 67 RGNFTDEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MGRSPCCEKS HTNKGAWTKE EDERLIAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TDEEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLSRG 120 IDPTTHRAIN ESSTQRVTSI SFTTGNYKDI EDEKMNIKAE FGTIKEDEIS SRAQCPDLNL 180 ELRISPPYQQ NQQKRALEQS STGSWRISPI CFKCNLGLKK SKDCSCSDSS NGNGCSSSRN 240 TSMNIAAYDC LGLKTNGLDY RTLETK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-104	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT04564