PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT04860

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 361aa MW: 41241.9 Da PI: 6.116

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT04860	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++++++G g+W+++++ g+ R++k+c++rw +yl OIT04860 14 KGLWSPEEDEKLCNYITKFGVGSWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	45.5	1.7e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++ +E+++++ +++ lG++ W+ Ia+ ++ gRt++++k++w++ OIT04860 67 RGMFSHDEEDRIISLHQVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110 7889****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MGRYSCCVKQ KLRKGLWSPE EDEKLCNYIT KFGVGSWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGMF SHDEEDRIIS LHQVLGNRWA QIAAQLPGRT DNEIKNFWNS SLKKKLIKQG 120 IDPNTHKPLS ENQVKDEENC TNNTSMLQIP SAGLMDQPFH LTNSRSFNSE VNGQLAEASK 180 DEFVSKQVFD LLFIHEFQAN VNPNPNPSGY NSEILAQYQQ NMRPNDHRQS EFDGNPTYGF 240 CSETSITKLE HGQITETDFA SSSTSRMSSS NSSNVCRYQN TAEIQMTRML ENSDELSWEV 300 ENKIGSLFQY PYISIKNEEL KSSPRQEREF YGHSSGDFMN NPLSSLTEEL NGATLDVFQQ 360 I

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MGRYSCCVKQ KLRKGLWSPE EDEKLCNYIT KFGVGSWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SHDEEDRIIS LHQVLGNRWA QIAAQLPGRT DNEIKNFWNS SLKKKLIKQG  120
IDPNTHKPLS ENQVKDEENC TNNTSMLQIP SAGLMDQPFH LTNSRSFNSE VNGQLAEASK  180
DEFVSKQVFD LLFIHEFQAN VNPNPNPSGY NSEILAQYQQ NMRPNDHRQS EFDGNPTYGF  240
CSETSITKLE HGQITETDFA SSSTSRMSSS NSSNVCRYQN TAEIQMTRML ENSDELSWEV  300
ENKIGSLFQY PYISIKNEEL KSSPRQEREF YGHSSGDFMN NPLSSLTEEL NGATLDVFQQ  360
I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G57560.1	1e-77	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT04860