PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT04865
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 239aa    MW: 27462.1 Da    PI: 9.7592
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT04865genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.7e-151966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l+ ++ ++G  +W+  ++  g+ Rt+k+c++rw +yl
         OIT04865 19 KGAWSPEEDQKLKSYIMRYGIWNWSHMPKFAGLSRTGKSCRLRWMNYL 66
                     79******************99************************97 PP
2Myb_DNA-binding45.61.6e-1472117148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g++T +E e l++  ++lG++ W++Ia++++ gRt++++k++++++l
         OIT04865  72 KGPFTMQERETLINMYQELGSR-WSAIAAKLP-GRTDNDVKNFFYTHL 117
                      79********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MSSVPQQQQK STNMEEIKKG AWSPEEDQKL KSYIMRYGIW NWSHMPKFAG LSRTGKSCRL  60
RWMNYLHPDV KKGPFTMQER ETLINMYQEL GSRWSAIAAK LPGRTDNDVK NFFYTHLKKH  120
MGMKNDALLK SNARRKRVEN TKKAQERPVL FAAINNLTIG TSSNNSLISP DVSSSCSSSS  180
IITFGENQKM NIDMENTVIL ESNPETHQSD HSLSIESVDQ FDTSSFWFHL LNDAHRLIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-47MYB family protein