PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT04973

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 558aa MW: 60719.2 Da PI: 8.2508

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT04973	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.7	1.6e-16	261	310	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr ++P++ ++K +Ka+ L +++eYI+ Lq OIT04973 261 RSKHSATEQRRRSKINDRFQMLRGIIPNS----DQKRDKASFLLEVIEYIHFLQ 310 889***********************9....9****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence
MELPQPRPFG TEGRKTTHDF LSLYSPVQQD PTPPQAGGFL KTHDFLQPLE QAEKALRKEE 60 DKVEVVAVEK PPAPVASPSV EHILPGGIGT YSISYLHQRV PKPEASLFAV AQATSTDRND 120 ENSNCSSYTG GSGFTLWDES AVKKGKTGKE NSGGDRHALR EAGLNTGGGQ PTTSLEWQSQ 180 SSSNKHNTTA ISSLSSARQS SPLKSQSFVH MIRSAKNAQD DDDDDDDEDF VIKKEPQSHP 240 RGNLSVKVDG EGNDKKPNTP RSKHSATEQR RRSKINDRFQ MLRGIIPNSD QKRDKASFLL 300 EVIEYIHFLQ EKVHKYEESY QGWENEPLKL PLSKCHRTTQ GASNHPQGTI NASGAAPTYA 360 VKFDENIMGI SSTNPFNEKK VEPNISTTSL KEISQRPGLT NKVTTPSMHP NAFPFGAASS 420 TAALYSSKLT ADTAKLESKS HPQLSVSRSH MTDYAIPNAN PKGQDLSIES GTISISSAYS 480 QGLLNTLTLA LQNSGVDLSQ ANISVQIDLG KRANGRLHSS ASTVKGDDVS TSNQPIPKSI 540 GTSTRDESDR AFKRLKTS

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence

MELPQPRPFG TEGRKTTHDF LSLYSPVQQD PTPPQAGGFL KTHDFLQPLE QAEKALRKEE  60
DKVEVVAVEK PPAPVASPSV EHILPGGIGT YSISYLHQRV PKPEASLFAV AQATSTDRND  120
ENSNCSSYTG GSGFTLWDES AVKKGKTGKE NSGGDRHALR EAGLNTGGGQ PTTSLEWQSQ  180
SSSNKHNTTA ISSLSSARQS SPLKSQSFVH MIRSAKNAQD DDDDDDDEDF VIKKEPQSHP  240
RGNLSVKVDG EGNDKKPNTP RSKHSATEQR RRSKINDRFQ MLRGIIPNSD QKRDKASFLL  300
EVIEYIHFLQ EKVHKYEESY QGWENEPLKL PLSKCHRTTQ GASNHPQGTI NASGAAPTYA  360
VKFDENIMGI SSTNPFNEKK VEPNISTTSL KEISQRPGLT NKVTTPSMHP NAFPFGAASS  420
TAALYSSKLT ADTAKLESKS HPQLSVSRSH MTDYAIPNAN PKGQDLSIES GTISISSAYS  480
QGLLNTLTLA LQNSGVDLSQ ANISVQIDLG KRANGRLHSS ASTVKGDDVS TSNQPIPKSI  540
GTSTRDESDR AFKRLKTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	1e-103	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT04973