PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT04974

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 345aa MW: 39336.6 Da PI: 6.3131

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT04974	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8e-05	182	201	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ OIT04974 182 FSCPLCFKTFNRYNNMQMHM 201 89*****************9 PP
2	zf-C2H2	14.6	9.8e-05	266	288	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ OIT04974 266 FMCRKCGKAFAVRGDWRTHEKNC 288 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MSDPYTNYFH GWFNNLNPLY HFSSSSSSSS SYNYILPSTN FQYNEYFQTS PPFPPLEEPL 60 PLLSLSPTIR QIQDQDYSSN STTMEVDNTT NNSKENKEES FISNFGDDQE DDESVSVALQ 120 LGLPNPSPEL ISRISTTNTI EETNKEDQEV TLANGYSTTS TLHKGQYWIP TPAQILIGPT 180 QFSCPLCFKT FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TAMLRLPCFC CAAGCRNNID 240 HPRAKPLKDF RTLQTHYKRK HGIKPFMCRK CGKAFAVRGD WRTHEKNCGK LWYCTCGSDF 300 KHKRSLKDHI KAFGNGHAAY GIDCLEEEDE PASEIEQDND HDPSN

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MSDPYTNYFH GWFNNLNPLY HFSSSSSSSS SYNYILPSTN FQYNEYFQTS PPFPPLEEPL  60
PLLSLSPTIR QIQDQDYSSN STTMEVDNTT NNSKENKEES FISNFGDDQE DDESVSVALQ  120
LGLPNPSPEL ISRISTTNTI EETNKEDQEV TLANGYSTTS TLHKGQYWIP TPAQILIGPT  180
QFSCPLCFKT FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TAMLRLPCFC CAAGCRNNID  240
HPRAKPLKDF RTLQTHYKRK HGIKPFMCRK CGKAFAVRGD WRTHEKNCGK LWYCTCGSDF  300
KHKRSLKDHI KAFGNGHAAY GIDCLEEEDE PASEIEQDND HDPSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-133	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT04974