PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT05024

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 411aa MW: 43892.2 Da PI: 7.6558

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT05024	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.7	1.4e-40	92	208	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............. 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + OIT05024 92 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqlrssyfnpnfs 192 789******************************************************************99987777777777555555555556666666 PP TCP 89 ...............k 89 + OIT05024 193 lsqrrglfpgiglssD 208 6666666666666541 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MDGGGDDHHL HQHHQHHHHH RPIATFPFQL LEKKEDEACS SSSNAAAAYT SLAISNVDNT 60 HTNPNNTPRS TTSSASTLQI SASGADSSKK PPPKRTSTKD RHTKVDGRGR RIRMPALCAA 120 RVFQLTRELG HKSDGETIEW LLQQAEPAVI AATGTGTIPA NFTSLNISLR SSGSSMSVPS 180 QLRSSYFNPN FSLSQRRGLF PGIGLSSDNS ATTLLNFQTN LNPSMQLQTK NELRDSSIDL 240 TETSAEDNLN RKRRSDLDLE QQHQQQMGSY LLQSSTGTMP TSHSSIPANF WMVTNPIPNN 300 QVMGGDPIWP FQSVSNSGAA AAALYRGTMP SGLQFMNFPT PVALLPSQQL GGSSGGGGGS 360 NNGLGEGQLG MFAGLNPYRP GGGVSESQAS GSHSHHGGGA DDRHDTTSHH S

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MDGGGDDHHL HQHHQHHHHH RPIATFPFQL LEKKEDEACS SSSNAAAAYT SLAISNVDNT  60
HTNPNNTPRS TTSSASTLQI SASGADSSKK PPPKRTSTKD RHTKVDGRGR RIRMPALCAA  120
RVFQLTRELG HKSDGETIEW LLQQAEPAVI AATGTGTIPA NFTSLNISLR SSGSSMSVPS  180
QLRSSYFNPN FSLSQRRGLF PGIGLSSDNS ATTLLNFQTN LNPSMQLQTK NELRDSSIDL  240
TETSAEDNLN RKRRSDLDLE QQHQQQMGSY LLQSSTGTMP TSHSSIPANF WMVTNPIPNN  300
QVMGGDPIWP FQSVSNSGAA AAALYRGTMP SGLQFMNFPT PVALLPSQQL GGSSGGGGGS  360
NNGLGEGQLG MFAGLNPYRP GGGVSESQAS GSHSHHGGGA DDRHDTTSHH S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	2e-47	TCP family protein

Link Out ? help Back to Top
Ensembl	OIT05024