PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT05074

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 260aa MW: 29308.2 Da PI: 9.2555

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT05074	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.9	7.4e-08	67	88	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C f r G C+yG+ C++aH OIT05074 67 PPCLQFKRWGSCSYGNECRYAH 88 89******************** PP
2	zf-CCCH	22.5	2.1e-07	106	129	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k + C++f + +C+yG++C+F H OIT05074 106 KPKSCHYFDSGKECPYGNKCHFLH 129 566799999999************ PP
3	zf-CCCH	34.7	3e-11	169	194	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C ++ rtG C yG++C+FaHg+ OIT05074 169 KTKFCVNWERTGSCAYGSKCQFAHGK 194 566699******************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MSTPANNFGI SCKREEHFST HWPQFNTSGQ KCGFSSNAEC QSFKRPRMMN SKMGPEDNRS 60 MNLGPQPPCL QFKRWGSCSY GNECRYAHIT GRLNGIRVED QRNLSKPKSC HYFDSGKECP 120 YGNKCHFLHE RNQKLEGGVG FCRVSSAISI ATSGREHKRT VELRKELLKT KFCVNWERTG 180 SCAYGSKCQF AHGKAELQTL GSSNTLEPLG TSGISAPAKT AASECRFLFK WTNVQKISQI 240 YADWIERVQL VPLSSHTMEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	1e-20	C3H family protein

Link Out ? help Back to Top
Ensembl	OIT05074