PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT05082

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 199aa MW: 22336.3 Da PI: 4.7622

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT05082	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	74.7	1.7e-23	5	74	31	100
DUF260 31 anvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 a++hk+FGasnv+kll+++p ++r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ +l+a+la+lke+ OIT05082 5 AAIHKVFGASNVSKLLAHIPVTDRGEAAVTIAYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLKEQ 74 579**************************************************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence
MTGSAAIHKV FGASNVSKLL AHIPVTDRGE AAVTIAYEAQ ARLQDPIYGC VSHIFALQQQ 60 VVNLQAQLAS LKEQAAHQNL QNGSNYANPN YEKFQDLQSW FHQSENSNTN MSQFDSSLTS 120 NNIGSTPYYG SHENMTSNNY HMGSYENMML TKENMSSFEE GSCSIDSYDM QTDHHNSQWT 180 FQDDADDLQS VAFRYLQHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	8e-29	LBD family protein

Link Out ? help Back to Top
Ensembl	OIT05082