PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT05173

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-X1

Protein Properties

Length: 1122aa MW: 121193 Da PI: 8.1878

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT05173	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	21.9	3.7e-07	446	463	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+Cq+ CH G+C pC OIT05173 446 CGVHRCQAVCHSGDCAPC 463 ****************** PP
2	zf-NF-X1	18.6	4.1e-06	542	560	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++lCH G CppC OIT05173 542 CGQHSCESLCHSGHCPPCL 560 ******************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 1122 aa Download sequence
MSLSSAQNNR RNNNSNRPGN NPVQSARREW VPRGSTATTT VSAAPVTTTV ATTVVSPAFN 60 LNGSSSAGNG REKDNVSVAP VHRRNQTYLG PNLNKGPTYA RRERGRGREN HNYQENRVER 120 AVNGRINQGE HKRLKDPNLP QLVQEIQEKL LKGNIECMIC YDMVRRSAPV WSCSSCYSIF 180 HLNCIKKWAR APTSVDTSAE KNQGFNWRCP GCQSVQLTSS KEIRYICFCG KRPDPPSDLY 240 LTPHSCGEPC GKKLEKELPG HDLSEEDLCP HVCVLQCHPG PCPPCKAFAP ARSCPCGKEV 300 ITTRCSDRKS VLTCGQQCGK LLDCGRHRCE QTCHVGPCGH CQVIVNAYCF CKKKTEVVLC 360 GDMGVKGDIK IEDGVFSCSS ACGRKLSCGN HVCLELCHPG PCGDCALLPS KVKTCCCGKS 420 SLEDERHSCL DPIPTCSKVC GKSLRCGVHR CQAVCHSGDC APCLVPVTQR CRCGSTSRTV 480 ECYKTQAEDE KFTCDRPCGQ KKNCGRHRCS ERCCPLSNPK NSVTGGWNPH FCSMPCEKKL 540 RCGQHSCESL CHSGHCPPCL ETIFTDLTCA CGRTSIPPPL PCGTPSPSCQ LPCSVPQPCG 600 HPPTHSCHFG DCLPCAVPVA KECVGGHVIL RNIPCGSKDI RCNKLCGKTR QCGLHACART 660 CHSSPCDFSA GPSNGSRASC GQTCGAPRRD CRHTCTALCH PSSPCPDVRC EFPVTITCSC 720 GRVTANVPCD AGGQIVDSVF EASIIHKLPS PLQPIDINGK KVPLGQRKLT CDDECAKMEK 780 KKVLSDAFGI TPPNLEALHF GDAAVSEVLG DLLRRDPKWV LSIEERCKCL VLGRSRGGVN 840 ALKVHVFCPM LKEKRDAVRL IAARWKLSVN AAGWEPKRFI TVHVTPKSKA PARILGAKGC 900 TVNNIAQPAV FDSLVDMDPR LVVALFDLPR DADISALVLR FGGECELVWL NDKNALAVFS 960 DPARAATAMR RLDQGSAYCG AAVVPQSGVA SAVTSSTNAW GVFGAAKDGG GAAALKGNPW 1020 KKAVVQEPHL RDSPWDPEEW SKNPTDSAPS AWRTNEATTA ASSNRWSVLE PEMTSNLARA 1080 SITIKEPVTE PGVGGSALPP KPQDVGVDEM ADVVDDWEKA YD

Sequence ? help Back to Top

Protein Sequence Length: 1122 aa Download sequence

MSLSSAQNNR RNNNSNRPGN NPVQSARREW VPRGSTATTT VSAAPVTTTV ATTVVSPAFN  60
LNGSSSAGNG REKDNVSVAP VHRRNQTYLG PNLNKGPTYA RRERGRGREN HNYQENRVER  120
AVNGRINQGE HKRLKDPNLP QLVQEIQEKL LKGNIECMIC YDMVRRSAPV WSCSSCYSIF  180
HLNCIKKWAR APTSVDTSAE KNQGFNWRCP GCQSVQLTSS KEIRYICFCG KRPDPPSDLY  240
LTPHSCGEPC GKKLEKELPG HDLSEEDLCP HVCVLQCHPG PCPPCKAFAP ARSCPCGKEV  300
ITTRCSDRKS VLTCGQQCGK LLDCGRHRCE QTCHVGPCGH CQVIVNAYCF CKKKTEVVLC  360
GDMGVKGDIK IEDGVFSCSS ACGRKLSCGN HVCLELCHPG PCGDCALLPS KVKTCCCGKS  420
SLEDERHSCL DPIPTCSKVC GKSLRCGVHR CQAVCHSGDC APCLVPVTQR CRCGSTSRTV  480
ECYKTQAEDE KFTCDRPCGQ KKNCGRHRCS ERCCPLSNPK NSVTGGWNPH FCSMPCEKKL  540
RCGQHSCESL CHSGHCPPCL ETIFTDLTCA CGRTSIPPPL PCGTPSPSCQ LPCSVPQPCG  600
HPPTHSCHFG DCLPCAVPVA KECVGGHVIL RNIPCGSKDI RCNKLCGKTR QCGLHACART  660
CHSSPCDFSA GPSNGSRASC GQTCGAPRRD CRHTCTALCH PSSPCPDVRC EFPVTITCSC  720
GRVTANVPCD AGGQIVDSVF EASIIHKLPS PLQPIDINGK KVPLGQRKLT CDDECAKMEK  780
KKVLSDAFGI TPPNLEALHF GDAAVSEVLG DLLRRDPKWV LSIEERCKCL VLGRSRGGVN  840
ALKVHVFCPM LKEKRDAVRL IAARWKLSVN AAGWEPKRFI TVHVTPKSKA PARILGAKGC  900
TVNNIAQPAV FDSLVDMDPR LVVALFDLPR DADISALVLR FGGECELVWL NDKNALAVFS  960
DPARAATAMR RLDQGSAYCG AAVVPQSGVA SAVTSSTNAW GVFGAAKDGG GAAALKGNPW  1020
KKAVVQEPHL RDSPWDPEEW SKNPTDSAPS AWRTNEATTA ASSNRWSVLE PEMTSNLARA  1080
SITIKEPVTE PGVGGSALPP KPQDVGVDEM ADVVDDWEKA YD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X1 family protein

Link Out ? help Back to Top
Ensembl	OIT05173