PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT05310
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 247aa    MW: 26822.5 Da    PI: 7.8877
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT05310genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.11.6e-294107199
    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
               +C++C+vlr++C+++C + p++     p++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +P+yG++g+++++++ql+q+++e++l
  OIT05310   4 SCNGCRVLRKGCNEKCSIKPCLqwiksPEAQSNATIFLAKFYGRAGLLNLINSGPDHLRPAIFRSLLYEACGRIVNPIYGSTGLLTSGNWQLCQAAVEAVL 104
               6************************************************************************************************9988 PP

    DUF260  97 lke 99 
                ++
  OIT05310 105 SGA 107
               765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MRLSCNGCRV LRKGCNEKCS IKPCLQWIKS PEAQSNATIF LAKFYGRAGL LNLINSGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSTGLLTS GNWQLCQAAV EAVLSGASIE KLSLDSAVNS  120
VCPSLQACDI RHVSKENDLT PDLHKVKMRT KFKRVSAKPQ QRNQSPEVDD AARVMWSWSH  180
KEEAIGSPSR DSGLSQQRDG ESGDADSGSV ETVEASLAKL DESNVGLELT LGLQPVMMSP  240
ECGTTRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-80LBD family protein