PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT05321
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 347aa    MW: 39400.7 Da    PI: 7.9218
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT05321genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.29.9e-41992472130
       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssasec......eaesssss 81 
               a kkdrhski T++g+RdRR+Rls+++a++fF Lqd LGfdk+skt+eWLl+++k a+ el++                +ss+ sec      ++++  + 
  OIT05321  99 AYKKDRHSKINTARGPRDRRMRLSLDVARKFFNLQDLLGFDKASKTVEWLLTKSKSAVNELVQGinkencstanigaisTSSTTSECevvsgfDESTTTND 199
               78**************************************************************9999999999988765555567755554222222222 PP

       TCP  82 asnsssg.....kaaksaa.kskksqksaasalnlakesrakarararertrekm 130
                           + +  ++ k +k  ++ a+++ +akesr++arararert+ k+
  OIT05321 200 ------IqkqpnRGKVGEKkKANKLVRR-AAFNPVAKESRKQARARARERTKIKK 247
               ......0222334444444144444444.44899999**************9776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    
MYPSSNSCNY SLNISSSNNL FHIPSPNSMQ YEHELFQYFH DHHLLQPQQQ LLLTTPDHYM  60
AADSNKDTVI SSTNQDPEEV ELQGSCNNKK GDNKRVAAAY KKDRHSKINT ARGPRDRRMR  120
LSLDVARKFF NLQDLLGFDK ASKTVEWLLT KSKSAVNELV QGINKENCST ANIGAISTSS  180
TTSECEVVSG FDESTTTNDI QKQPNRGKVG EKKKANKLVR RAAFNPVAKE SRKQARARAR  240
ERTKIKKSFL NIGDQSMAAD ELKRLGCWSP FETGEESGIQ GTNHQVEEHI THNEEHILGT  300
KENVDDCNLV VTGNWNPYTI FNYHHNTEIS HEQQFTNFQF SGKFWEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.23e-29TCP family protein