PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT05325
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 295aa    MW: 32584.4 Da    PI: 8.009
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT05325genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.3e-071157447
                     S-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                     W++eE++ + +a++++  +    +W++ a+ ++ ++t  ++k ++q +
         OIT05325 11 WSKEEEKAFENAIAMHWVEdseqQWEKFAAVVP-TKTIDEIKRHYQLL 57
                     *****************99**************.***********965 PP
2Myb_DNA-binding391.9e-12134178347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
         OIT05325 134 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 178
                      7*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MSVSDLPSKL WSKEEEKAFE NAIAMHWVED SEQQWEKFAA VVPTKTIDEI KRHYQLLVDD  60
VAAIDAGHVP LPNYIGEESS SSSNKETNLG YSGSVDRRSN CGYTNGFSGP THDPIGHSGK  120
GNSKAEQERR KGIPWTEEEH RLFLLGLDKF GKGDWRSISR NFVISRTPTQ VASHAQKYFI  180
RLNSMNRDRR RSSIHDITSI NGGDVSTHQA PITGQQPNPN PSNPAALGPN IKHRNQPNMH  240
GYSMYGAPMG HPVAAPPSHM ASAVGTPVML PHGHHPPYVL PVAYPIPPPH PPPMH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.12e-75MYB family protein