PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT05381
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 257aa    MW: 28806.2 Da    PI: 9.2685
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT05381genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.52.6e-29101157158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQy++Il+RRq Rak+  e+k+  ksrkpylheSRh+hA+rR+R  gGrF
   OIT05381 101 EEPMYVNAKQYHGILRRRQLRAKAVLEQKV-VKSRKPYLHESRHRHAMRRARDGGGRF 157
                69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MGADTYGEVE RTIYQRSAYS DYKREGKHAE FMPPIMGENL RAANQFEQMA PSIAFKSYPY  60
SEVPQYSGGN VAAACGESTV HQNIERSVHN GRMIMPLEVT EEPMYVNAKQ YHGILRRRQL  120
RAKAVLEQKV VKSRKPYLHE SRHRHAMRRA RDGGGRFLNT KKKIQLPANN NINATTPSSK  180
GKGCAASEVS SMDSDFSQNY LLSSGHIGSS NATSVEGFQF QGIHNTENPQ LGCHYQWNLN  240
DNHCNCMQSG ASNLQPF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142151RHRHAMRRAR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.24e-30NF-YA family protein