PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT05540

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 247aa MW: 27272.3 Da PI: 6.3028

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT05540	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0015	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C + F ++ L H++ H OIT05540 95 FSCNFCRRKFYSSQALGGHQNAH 117 89*****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MKPPNFNLES EDESEVSSCQ LGSNIYVQET CPGPSKDSST NSCLTNSFNL QQDSLHVTLD 60 LTLGFNRSDP ELNANGETSD EVVRHPPTAA LSRIFSCNFC RRKFYSSQAL GGHQNAHKRE 120 RTLAKRAMRM GMLSDRYASM ASFPLHGAAF PSLGVEAHAS MHQRVSYQET PTHASRGGAR 180 FEQGYFGMPV FVEDDEVEMF WPGSFRQVEG IGGNQRFNSG QGSNINFVTV APPTRTDPSL 240 PDLNLKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	5e-49	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT05540