PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT05606

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 373aa MW: 42571.1 Da PI: 8.2509

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT05606	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50	6.6e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l+ +++++G g+W+ +++ g+ R++ +c++rw +yl OIT05606 14 KGLWTPEEDQKLLAYIEEHGCGSWSDLPSKAGLQRCGRSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	38.6	2.5e-12	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ e + +++++++lG++ W++Ia+ ++ +R+++ +k++w++ OIT05606 67 RGKFSSEGERTILQLHALLGNR-WSAIASLLP-NRSDNVIKNYWNT 110 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MGRSPCIDKK GFKKGLWTPE EDQKLLAYIE EHGCGSWSDL PSKAGLQRCG RSCRLRWINY 60 LRPNIKRGKF SSEGERTILQ LHALLGNRWS AIASLLPNRS DNVIKNYWNT RLKKRLIKMG 120 IDPMTHQPKR DTSQSNKSIS SLCHMAEWET ARLEAEARLV RNSNMAPSRA SIVSHFGNKP 180 LSMHIFSAWS TLESYASRMV SNNGACIVVN SKIYNNNNNN YQPRNFQLPC LDVLKAWQMS 240 RTKSPTINED INSTIFLDGF FTKNLKSPTP SENLLLNIEQ TEEVGEKSSL PTVSCIKDFF 300 LYEDKITQDN DILQTDLAEL FPEYDCSQKA ENYSSEQLET FLESCSGNFE DNKSNWNNHF 360 PYLVTSPIGS PLF

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MGRSPCIDKK GFKKGLWTPE EDQKLLAYIE EHGCGSWSDL PSKAGLQRCG RSCRLRWINY  60
LRPNIKRGKF SSEGERTILQ LHALLGNRWS AIASLLPNRS DNVIKNYWNT RLKKRLIKMG  120
IDPMTHQPKR DTSQSNKSIS SLCHMAEWET ARLEAEARLV RNSNMAPSRA SIVSHFGNKP  180
LSMHIFSAWS TLESYASRMV SNNGACIVVN SKIYNNNNNN YQPRNFQLPC LDVLKAWQMS  240
RTKSPTINED INSTIFLDGF FTKNLKSPTP SENLLLNIEQ TEEVGEKSSL PTVSCIKDFF  300
LYEDKITQDN DILQTDLAEL FPEYDCSQKA ENYSSEQLET FLESCSGNFE DNKSNWNNHF  360
PYLVTSPIGS PLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	3e-85	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT05606