PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT05617
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 318aa    MW: 36280.9 Da    PI: 6.9098
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT05617genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.91.1e-35211312103
       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssaseceaesssss 81 
               +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++                     +            sss
  OIT05617  21 TGKKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLDELppwnpsihdannmhtniteadG------------SSS 109
               68**************************************************************8777644443333322222220............222 PP

       TCP  82 asnsssg......kaaksaakskksqks 103
                     g      ++++++ +++ ++++
  OIT05617 110 ------GnnivleQQQEFELHRQLEENN 131
               ......2223333222222222211111 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MKRATGGEIV QVEGGHILRC TGKKDRHSKV YTAKGPRDRR VRLSAHTAIQ FYDVQDRLGY  60
DRPSKAVDWL IKKAKNAIDK LDELPPWNPS IHDANNMHTN ITEADGSSSG NNIVLEQQQE  120
FELHRQLEEN NPSGGNSSNS YMMQTHTGGE RQSLGDTMKS FFPMNSGTSL MNFQNYPHEI  180
ILPRSASFQN EDLGLSLHST TFHDHNSNHR ASSSHDHQTI FPSQNFETNY SRMAGWILPH  240
HQQTFYSPQP QGSVFPQREP LQSNFSQLIH AWEERPPMDH VHHQAEIFNR HFTSDFQIPA  300
RIHGEHEEPS SASPNSHH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.22e-52TCP family protein