PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT05673
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 272aa    MW: 31523.9 Da    PI: 6.7873
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT05673genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd  l++ ++++G g+W++ ar+ g++Rt+k+c++rw++yl
         OIT05673 14 RGSWTVEEDFTLINHIALHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding51.62.1e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
         OIT05673  67 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 110
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MDHHVNEDNM DLKRGSWTVE EDFTLINHIA LHGEGRWNSL ARCAGLKRTG KSCRLRWLNY  60
LRPDVRRGNI TLEEQLLILE LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKQLK  120
CDVNSKQFKD TIRYLWMPRL VERIQASSNS AATTSITTTN NSNNNNNNHA STSVTQEYST  180
VTASSENSMG TQVSPVSDMS DCCYNNYPIN QSDYGELLIS PTGYFQHGAL DFRTVDYNNQ  240
QNMSQWMEGT EDVSDNLWNI EDMLFLQQQL NN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-84MYB family protein