PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT05681

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 228aa MW: 25761.7 Da PI: 7.9402

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT05681	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.3e-05	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k Fs++ L H++ H OIT05681 83 FECNYCLKEFSNSQALGGHQNAH 105 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MDKDISTFFH PLCNVGGNEC VSKSCLEIKR LKIFGFELDP CQKYLKGELG DGESVNSSCS 60 TISARREKQP SNDAKDEPTE KKFECNYCLK EFSNSQALGG HQNAHKKERM RKKRLQLQET 120 KARLSYYLQA LQSSNNNIAN YHGLTSSPYF SDPNFRYNSS DLFTLYEESN ISFSSYDQDS 180 QESCTFTLTH GTRSRENSME AVKLSSLPNS ASKQSCKPLD LKLGLGLH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06650.1	1e-13	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT05681