PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT05706

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 306aa MW: 35617.7 Da PI: 4.9002

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT05706	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.6e-18	86	139	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q++ Le+ Fe ++++ e++ +LAk++gL+ rqV++WFqNrRa++k OIT05706 86 KKRRLLPKQVQFLEKSFEVENKLEPERKIQLAKETGLQPRQVSIWFQNRRARYK 139 45577899*********************************************9 PP
2	HD-ZIP_I/II	118.1	4.9e-38	85	176	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl +qv++LE+sFe e+kLeperK +la+e glqprqv +WFqnrRAR+k+kqlEkdy++Lk+++d+lk+e + L k++++Lr+e++ OIT05706 85 EKKRRLLPKQVQFLEKSFEVENKLEPERKIQLAKETGLQPRQVSIWFQNRRARYKSKQLEKDYDVLKASFDKLKDEYDCLLKKNDNLRNEVH 176 69**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence
MEVARVYEGS NMNSFILPNE SFPLPSKVLH SLWISNSSPT SLGSVSMVNF DDTRGKKTKE 60 RSFFPSLDKE ENSNEDYEDF FHQPEKKRRL LPKQVQFLEK SFEVENKLEP ERKIQLAKET 120 GLQPRQVSIW FQNRRARYKS KQLEKDYDVL KASFDKLKDE YDCLLKKNDN LRNEVHLLKE 180 KLFNREQNSE QKEPISPLNT EAQNPTKNMQ NLTMMVCKQE DASSAKSDIL DSDSPCYADG 240 NYTSFLEPAD SSHVFETETS DFSQENDSLS RTLLSSLCFP KLEDDLPVNS CHLSFQIEDQ 300 SWFCHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	142	RRARYKSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	4e-46	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OIT05706