PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT05756
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 500aa    MW: 57364.3 Da    PI: 5.0045
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT05756genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS267.15.8e-821444871344
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalklfsevsPilkfshltaN 99 
               lve Ll+cAe v +++  +a++lL++  +l+s++g+p+qRl+ yf +AL++r+ +  +++  k l+     + +   ++++  ++ ++  Pi ++  ++  
  OIT05756 144 LVECLLSCAEKVGQKQYDRATKLLNECDKLSSKTGNPVQRLVYYFSRALRERVDKeIGENNTKGLEIYGMGDLQeALRSINQCTIAVQDMPICQVIKFAGI 244
               5789***************************************************7778888888887776555355666666679999************ PP

      GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egpp..slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
               qaI+e v + +++HiiD++i++G+QW  L+qaL + +  +++p   l+iT++g  +  s+++leetg+rL +fAe+l++ f f+ ++ ++++dl+ e++++
  OIT05756 245 QAIVENVRNYKKIHIIDLEIKMGVQWTILIQALVTHQqeSQSPfeYLKITALGYTQ--SRTKLEETGKRLMSFAESLNLLFYFKSVIIEDISDLKKEDFDI 343
               **********************************887664455458********55..******************************************* PP

      GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
               +p+E++aV  ++ l ++  ++ +le     ++ ++k+++P+++v++e ea+hns+ F++rf+eal y+ a+fd +e  + +++++r+++E e++ + i+n+
  OIT05756 344 DPEETIAVYAQHFLSNMIMQQEKLEF----LMGFIKGINPRIMVIAEVEANHNSPVFVDRFIEALFYHGAFFDLFEDCMKNNESNRTTMESEFMWQGIRNI 440
               ******************88888887....99********************************************************************* PP

      GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
               va+eg+er+ rh t e Wre ++++G+++++ls++   qak+ l+  
  OIT05756 441 VAAEGEERTIRHVTIELWREYFKRFGMEEMKLSNSSLYQAKMPLSCL 487
               *****************************************988655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    
MKTSTVITET NEEDYTSKKL LRSDSDFVTF DDWDFDVENE TKTALYVTPE SLTHNKKSRT  60
SLISSLNILK DFGNGFKKLK GQKITIQTSE IKCANNGKLS TDSILRLGGQ NFIQSFESSV  120
SSVDHPFVSS LLSLSEEDSR SVELVECLLS CAEKVGQKQY DRATKLLNEC DKLSSKTGNP  180
VQRLVYYFSR ALRERVDKEI GENNTKGLEI YGMGDLQEAL RSINQCTIAV QDMPICQVIK  240
FAGIQAIVEN VRNYKKIHII DLEIKMGVQW TILIQALVTH QQESQSPFEY LKITALGYTQ  300
SRTKLEETGK RLMSFAESLN LLFYFKSVII EDISDLKKED FDIDPEETIA VYAQHFLSNM  360
IMQQEKLEFL MGFIKGINPR IMVIAEVEAN HNSPVFVDRF IEALFYHGAF FDLFEDCMKN  420
NESNRTTMES EFMWQGIRNI VAAEGEERTI RHVTIELWRE YFKRFGMEEM KLSNSSLYQA  480
KMPLSCLSDC NSELQTAEKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-49GRAS family protein