PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT05866
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 237aa    MW: 26964.7 Da    PI: 8.1477
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT05866genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.5e-1466112354
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               r+h+e+E+rRRdriN  +++Lr+l+P +     +K++Ka+ L+ +ve++k+L
  OIT05866  66 RSHSEAEKRRRDRINAQLSTLRKLIPRS-----EKMDKAALLRSVVEHVKDL 112
               78************************98.....8****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MMENSSCSEY WPEAETETHF QQVGAASPFL FPLVPNSCDD TSFQLYEKPC YWSQQFEEDT  60
SASASRSHSE AEKRRRDRIN AQLSTLRKLI PRSEKMDKAA LLRSVVEHVK DLKGRAKEIS  120
KVLNTPTDID QVIIEHLDEE QNSSNSIILK VCVCCDDRPE LFSELNRALK NLKLTTVEAN  180
ITSLGGRIKC VFMLKSVNGV CLNSLKHSLS RIAISPCTSN YRIKSKRQRF FLPPNFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224229KSKRQR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.14e-37bHLH family protein