PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT05948
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 272aa    MW: 31361.2 Da    PI: 6.5779
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT05948genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.87e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +lv+ +   G  +W+tI++  g+ R++k+c++rw +yl
         OIT05948 14 RGPWTIEEDHKLVHFILNNGIQCWRTIPKLAGLQRCGKSCRLRWINYL 61
                     89********************************************97 PP
2Myb_DNA-binding52.89.2e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++ E++++++++++lG++ W++Ia++++ gRt++++k++w++
         OIT05948  67 RGALSEAEEDQIIQLHARLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                      78889*****************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MGRQPCCDRV GLKRGPWTIE EDHKLVHFIL NNGIQCWRTI PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAL SEAEEDQIIQ LHARLGNRWS KIASHFPGRT DNEIKNHWNT RIKKKLKQAG  120
IDPLTHKPID HEKYQQESDD TIMELNLPIH HHKTETLSRT ETYDKSNEAE NCAANATDFS  180
LSNNAYHNVL SENFDVDLWS KSCKTMSNCY SPTLSLEAEE SIKFSTVSAV TESSSNIEPA  240
EEQDSLQQWM DSIFSCAVNQ LEEDLFLLRK YN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.16e-81MYB family protein