PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT05978
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 288aa    MW: 32666.7 Da    PI: 7.0992
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT05978genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.4e-192471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd llv+++ q+G g+W+  a++ g++Rt+k+c++rw++yl
         OIT05978 24 RGPWTVEEDSLLVNYISQHGEGRWNMLAHRAGLKRTGKSCRLRWLNYL 71
                     89********************************************97 PP
2Myb_DNA-binding53.26.9e-1777120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ +lG++ W++Ia++++ gRt++++k++w++
         OIT05978  77 RGNLTPQEQLLILELHSKLGNR-WSKIAQYLP-GRTDNEIKNYWRT 120
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
METDMSFLSK SSSSSSDDEV GLRRGPWTVE EDSLLVNYIS QHGEGRWNML AHRAGLKRTG  60
KSCRLRWLNY LKPDVKRGNL TPQEQLLILE LHSKLGNRWS KIAQYLPGRT DNEIKNYWRT  120
RVQKQAKHLK IDSNSAAFQH IIRCLWIPRL VQKIQGSSAI PSIQTSLLDS QYGPYNITEI  180
TQTPQVLSLE RNSISSSRCC SSSSPSSESM STNKSPNIIS ECPKFPPREM GDSVVNVHFP  240
FDDNSYDMDT FSPATGNFLN NYDQMVGGEN NLMNGDILAE SFWSMDEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.15e-76MYB family protein