PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT06008
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 172aa    MW: 19971.4 Da    PI: 7.9886
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT06008genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-191569256
              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
              +++ ++t++q++ Le  F++n++++ +++ +LA++lgL+ rqV +W+qN+Ra++k
  OIT06008 15 CHKKRLTQDQVRLLEISFNSNNKLDSDRKSQLAQELGLPPRQVAIWYQNKRARWK 69
              567789************************************************9 PP
2HD-ZIP_I/II115.14.3e-3716107293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +k+rl+++qv+lLE sF++++kL+++rK++la+eLgl prqva+W+qn+RAR+k++ lE+dy+aL++++d+ +++n+rL+ eve+L+eel++
     OIT06008  16 HKKRLTQDQVRLLEISFNSNNKLDSDRKSQLAQELGLPPRQVAIWYQNKRARWKSQSLEVDYKALQQRLDNAMSDNDRLKLEVERLKEELNK 107
                  69**************************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MDFFNSQTRK NNLKCHKKRL TQDQVRLLEI SFNSNNKLDS DRKSQLAQEL GLPPRQVAIW  60
YQNKRARWKS QSLEVDYKAL QQRLDNAMSD NDRLKLEVER LKEELNKAQE MLLAFNTTTN  120
NYSSISSSCD EVGSSCLQLH DQSKHHLDKE LYACLIGDEG HFGHNFFASS MS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1919RKNNLKCHKKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.11e-26HD-ZIP family protein