PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT06167

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LSD

Protein Properties

Length: 182aa MW: 19187.4 Da PI: 8.6032

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT06167	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.9	1.4e-12	19	42	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCrt+L YPrGA++V+Ca+C++ OIT06167 19 CSGCRTILLYPRGASNVCCAVCNA 42 **********************97 PP
2	zf-LSD1	45.6	1.1e-14	58	82	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ PrGA+sVRC++C+tV OIT06167 58 CGGCRTLLMHPRGASSVRCSCCHTV 82 ************************9 PP
3	zf-LSD1	40.1	6.1e-13	96	119	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Cr +L+YP GApsV+Ca+C+ OIT06167 96 CGNCRMMLMYPCGAPSVKCAICHY 119 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence
MSIWLKSFRR ADMQSQLMCS GCRTILLYPR GASNVCCAVC NALTAVPPPG MEMAQLICGG 60 CRTLLMHPRG ASSVRCSCCH TVNLVPGPNQ FAHVYCGNCR MMLMYPCGAP SVKCAICHYI 120 TNVNAGDGRV HVPNGTATPA SGSSSSTAKA RSQNQTVVVQ NPMSVDESGK LVSNVVVGVT 180 TT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	2e-60	LSD family protein

Link Out ? help Back to Top
Ensembl	OIT06167