PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT06446
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 243aa    MW: 27004.8 Da    PI: 10.4694
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT06446genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF732.4e-231762449
              -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              +n+sn qvtfskRr+g++KKA+EL++LC++eva+++fs+  k+y +
  OIT06446 17 QNESNLQVTFSKRRAGLFKKASELCTLCGVEVALVVFSPGKKVYSF 62
              79******************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MARRSKGRQK VDMVKMQNES NLQVTFSKRR AGLFKKASEL CTLCGVEVAL VVFSPGKKVY  60
SFGHPCVDSV VDRFLTRNYP SNNGHDQLIV AHRNASVRDL NMELTNIEGI LQMEKNRGEA  120
LQARKRDSDH WWEAPIEELN FFQLQQLKEA LESIKKKVER KAQNQQMVTS NNSFPFLTFG  180
SALAPIGART LSSYGSYGSF PFQNMVSGLT FGAPSANSAN GSTSSVVPVI PKNPGTSRPS  240
MRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-58M-type_MADS family protein