PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT06473

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 197aa MW: 22498.1 Da PI: 5.4425

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT06473	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.4	3.3e-05	45	82	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + Er+RR+++N+++ Lr+l+ k +i + A+ YI++Lq OIT06473 45 IPERKRRQKLNERLLALRSLMTKE-----------AIITDAITYIRELQ 82 67*******************996...........69999999999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence
MLIKFEKMEF LNTPFDDSHI SEDSKVDRMK QIEGEVKEHK SKNLIPERKR RQKLNERLLA 60 LRSLMTKEAI ITDAITYIRE LQTNVSNLTE QLLEMKAPHI EELETKNEEI IDAAEPEVEV 120 VQIGTSNLWI KIVCQKKRGG FTKLMEAMNV LGFDLNDTSV TASKGTLLVT SSVEVVRGGL 180 IEAHQIREIL LEIIRGI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	47	52	ERKRRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21330.1	4e-34	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT06473