PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT06792
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 266aa    MW: 30007.9 Da    PI: 7.6142
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT06792genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.14.9e-18182216135
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
               C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  OIT06792 182 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 216
               *******************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MDVYGAEVFR IDDLLDFSND DIFSSSTGSS SNKTTNFDLN HQYHPPHSDN INLAAASYYD  60
PLIPNCADFT DKLCVPSDDV AELEWLSNFV EDSSNNYPSN SLTGTISLNS NNTSFHSKSR  120
SKRSRATTAN TSWASSLQQA HHKPTDEKPN QNPQHSNNHN TMKPQKESRE RSSEMSDIPR  180
KCTHCASEKT PQWRTGPLGP KTLCNACGVR YKSGRLVPEY RPAASPTFIL TQHSNSHRKV  240
MELRRQKEVQ QQSQQQGMYG HHFQVC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-59GATA family protein