PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT06898
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 238aa    MW: 26464.7 Da    PI: 10.1944
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT06898genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.71.4e-154995455
              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               hn  Er+RRdriN+++  L+el+P +      K +Ka++L +++eY+ksLq
  OIT06898 49 VHNLSERKRRDRINEKMKALQELIPRC-----NKSDKASMLDEVIEYVKSLQ 95
              6*************************8.....6******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MQICILLKGI SSAAFKLNCL FKDAEFESAD AKKQTSSSTS TKRSRAAEVH NLSERKRRDR  60
INEKMKALQE LIPRCNKSDK ASMLDEVIEY VKSLQMQVQM MSRGYSMVPM MYPGAPQYMP  120
TMGMGMRMGM GTGMGMNRPM VPYPSLMPGT AMQNAAAVAQ MTPRFPVPAS VPVPDPSRIR  180
AANQPDHPMM NSLVGHNTNQ PRLPNLSDPY QQYYALHQAQ VLPQFLNAKS ASGTTQQQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15459ERKRRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.19e-31bHLH family protein