PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT06924
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 312aa    MW: 35756.7 Da    PI: 8.6155
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT06924genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.9e-12132178455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +h++ E+rRR+ri ++   L el+P++      K s a++L +A++YI+ Lq
  OIT06924 132 MHKMSEKRRRQRIAKRVKVLEELIPNC-----NKSSRASVLDQAIQYIQALQ 178
               7*************************8.....6******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MSDQISKWNL SFPSSEDEDS YRKITLSHLK VEDDEVSQTK FLDNSPPTLL TLGIPGMENH  60
ELKIDSQQSE QDKKTRSIPC HENLDRKSRG RKRKCGENIE HLVPEFDANE SGRTSRRIED  120
GLQPSKASFV KMHKMSEKRR RQRIAKRVKV LEELIPNCNK SSRASVLDQA IQYIQALQHQ  180
VQVMSMDGFP ASNILARNQM MQSNNNNNIP SVIPQIMQNT LRFHPHVPIM RRVAVGSFFG  240
LGTSMMSPHF AASYWSLSHA VIVNLPPLMP AMELLLQQND FYSSLPYYRS FFPCDISRQD  300
SDMEQSSSIN LF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.28e-18bHLH family protein