PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT07086
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 326aa    MW: 36129.7 Da    PI: 7.2968
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT07086genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.5e-19244277134
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
               C++C++ kTp+WR gp g+ktLCnaCG++y++ +
  OIT07086 244 CTHCQVQKTPQWRAGPLGPKTLCNACGVRYKSGR 277
               *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MELIEARALK SSFLSDMAMK TSQQVFLEDI WCVTGINNVP SDDFSVDDLL DFSDKDFKDG  60
QSLQELHEDD EKDSFSGSSQ HRNSQVSNFS CMDSFSGELP VPVDELENLE WLSQFVDDST  120
SEFSLLCPAG SFKDKTGGFQ VSRSEPVIRP VVQKMRVPRF PLPVVQKPRT KRSRPAGRKW  180
SFASPTVSAD SCSPTSSSYG SSPFPSVLYT NPVLDGDLFC SVEKPPLKKP KKISAAETGS  240
GRRCTHCQVQ KTPQWRAGPL GPKTLCNACG VRYKSGRLFP EYRPACSPTF SQEVHSNSHR  300
KVLEMRRKKE SGDVVDSGLA TMISTC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-58GATA family protein