PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT07090
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SRS
Protein Properties Length: 204aa    MW: 22965.6 Da    PI: 8.7384
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT07090genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702177.85.1e-5591483154
    DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelets 103
               s +++CqdCGnqakkdC++ RCRtCC+srgf+C+th+kstW p++ rr r+++l++++ ++ +++ +a ++ +++              +++e +   e  
  OIT07090   9 SSSSRCQDCGNQAKKDCTYLRCRTCCRSRGFHCQTHIKSTWAPVSTRRPRHHHLHQQQLSTIQQQLQAGPNPNKR------------YRENHEIQGDQEGG 97 
               56789*********************************************9998887666655443333333332............22334444456778 PP

    DUF702 104 slPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
               ++P evs +avfrc+rvss+d+  +++aYqt+v+igGhvfkGiLydqG+e+
  OIT07090  98 DFPGEVSFPAVFRCIRVSSIDNVVDQYAYQTSVKIGGHVFKGILYDQGPEN 148
               9************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MMREVEGSSS SSRCQDCGNQ AKKDCTYLRC RTCCRSRGFH CQTHIKSTWA PVSTRRPRHH  60
HLHQQQLSTI QQQLQAGPNP NKRYRENHEI QGDQEGGDFP GEVSFPAVFR CIRVSSIDNV  120
VDQYAYQTSV KIGGHVFKGI LYDQGPENRY NNNMAAGESS SFQQQQPPNL LTAATISTTT  180
APSYPNLFTA FMPGTQFIQY PKSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.15e-47SRS family protein