PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT07202

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 715aa MW: 79616.4 Da PI: 5.2051

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT07202	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.7	1.8e-07	120	141	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C ff+r G+C+ Gd+C F+H OIT07202 120 VPCVFFQR-GICSKGDNCAFMHA 141 69****.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence
MVGPTPPLPQ LQTQPPAPSS AEDEALKRNT DCVYFLASPL TCKKGSECEY RHSDMARLNP 60 RDCWYWLNGN CLNPKCAFRH PPLDGFLEAQ APTVIGSSVA PVVSVAPMPQ VPYASSKQGV 120 PCVFFQRGIC SKGDNCAFMH APNSISSKPL QPPVSTASSE TPTAKNAFGG VQNAVHGKKL 180 SQTNHPKPSV LPKPVWKLEN HLTKKENTFD EKVLPPNSVI NRESTRYKPS MPATNGNSLS 240 GPNRVQQPIG LDDHSSMQNK DDEISREPSP GFDVLVDDEL RGSDYYHDED QYGGTRSNGG 300 RNEYDMGDSA DYDSVADIDR DMYRDGHGYD SYDRLQSRYA WEQPIASSER IPGGSAHLER 360 RRYGTVDRPE QVKMSDLRHR LSKHRRGNGL KSVIGHDFSS EKNVEDRANK SSRRDAHYVP 420 SHDSSLSGRL RGRIKLPVRS SSPTDRAELP LNREMDRARY RGRLSSERPQ LSSYQGRLQD 480 RIKGRVQEDL SNGDRNNRGP RLRRDIINDN NSYFVRPKSL VELKGRKTAE SNEQNLNEQQ 540 HLGKRKFQKL DSGEDQSFEG PMSLQEILKR KRGGGAGMTS GGSEDYEHER KGQTVMTIGN 600 VVDFPSAIIK NGSGLSIQQE EESKLAADHQ SPLCRSANEL EAEEEMIMEG SDAQGHGEGY 660 NQVDGDDDYE PVEGEDFPLE EGENGDLDDE YLDDDDDDDD DDGDDFAKKL GVVSS

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence

MVGPTPPLPQ LQTQPPAPSS AEDEALKRNT DCVYFLASPL TCKKGSECEY RHSDMARLNP  60
RDCWYWLNGN CLNPKCAFRH PPLDGFLEAQ APTVIGSSVA PVVSVAPMPQ VPYASSKQGV  120
PCVFFQRGIC SKGDNCAFMH APNSISSKPL QPPVSTASSE TPTAKNAFGG VQNAVHGKKL  180
SQTNHPKPSV LPKPVWKLEN HLTKKENTFD EKVLPPNSVI NRESTRYKPS MPATNGNSLS  240
GPNRVQQPIG LDDHSSMQNK DDEISREPSP GFDVLVDDEL RGSDYYHDED QYGGTRSNGG  300
RNEYDMGDSA DYDSVADIDR DMYRDGHGYD SYDRLQSRYA WEQPIASSER IPGGSAHLER  360
RRYGTVDRPE QVKMSDLRHR LSKHRRGNGL KSVIGHDFSS EKNVEDRANK SSRRDAHYVP  420
SHDSSLSGRL RGRIKLPVRS SSPTDRAELP LNREMDRARY RGRLSSERPQ LSSYQGRLQD  480
RIKGRVQEDL SNGDRNNRGP RLRRDIINDN NSYFVRPKSL VELKGRKTAE SNEQNLNEQQ  540
HLGKRKFQKL DSGEDQSFEG PMSLQEILKR KRGGGAGMTS GGSEDYEHER KGQTVMTIGN  600
VVDFPSAIIK NGSGLSIQQE EESKLAADHQ SPLCRSANEL EAEEEMIMEG SDAQGHGEGY  660
NQVDGDDDYE PVEGEDFPLE EGENGDLDDE YLDDDDDDDD DDGDDFAKKL GVVSS

Link Out ? help Back to Top
Ensembl	OIT07202