PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT07239

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 220aa MW: 25670.6 Da PI: 9.1556

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT07239	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.7	4.3e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++gklye+ss OIT07239 9 KRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPKGKLYEFSS 59 79***********************************************96 PP
2	K-box	71.4	2.7e-24	85	173	10	98
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +++e+l++e+a + +++e L+ ++R+llGe+L+s s+ eLqq+e+qLe+sl+ iR++Kn l++eqi +l++ ek l ++n +L+k+ OIT07239 85 DIQTTEHLKEEVATMTRKLEFLEDSKRKLLGEGLDSSSYDELQQVEEQLERSLSCIRARKNLLFREQIARLKEEEKILMKQNADLKKRC 173 557899*******************************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MVRGKTEMKR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIVFSP KGKLYEFSSS 60 STNKTIERYQ KNDKYLGLNR PKIADIQTTE HLKEEVATMT RKLEFLEDSK RKLLGEGLDS 120 SSYDELQQVE EQLERSLSCI RARKNLLFRE QIARLKEEEK ILMKQNADLK KRCEVLPLLM 180 TTVHKEKEDT ERQTMEVETE LFIGLPQRQS SHLFFSNCEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22950.1	4e-75	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT07239