PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT07258
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family YABBY
Protein Properties Length: 220aa    MW: 24294.7 Da    PI: 8.1084
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT07258genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY234.82e-72231846170
     YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee....lleelkveeenlksnvekeesastsvssekls 102
               s eq+CyvqCnfC+t+lavsvP +slfk+vtvrCGhCt+llsvn++++  ll++ ++l+          llee +++   l  n+ + ++  +      ++
  OIT07258  23 SGEQLCYVQCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNVNMRGLLLPSANQLHLPHSFFspqnLLEEIRNSPPGLLINQPNPNE--S-----LMP 116
               579***************************************************998765433331123455555444444444333222..2.....346 PP

     YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                   +e+p++p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  OIT07258 117 VRGVDELPKPPVANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 184
               677899***999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MSSSSAAFAP DHHLHHHHLS PPSGEQLCYV QCNFCDTVLA VSVPCSSLFK TVTVRCGHCT  60
NLLSVNVNMR GLLLPSANQL HLPHSFFSPQ NLLEEIRNSP PGLLINQPNP NESLMPVRGV  120
DELPKPPVAN RPPEKRQRVP SAYNRFIKDE IQRIKAGNPD ISHREAFSAA AKNWAHFPHI  180
HFGLMPDQPV KKPNACQQQG EDALMKEGFL APANVGVSPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-92YABBY family protein