PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT07385

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 233aa MW: 26340.2 Da PI: 7.0054

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT07385	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00053	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C++ F ++ L H++ H OIT07385 57 FSCLYCSRKFCTSQALGGHQNAH 79 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MADPNLVYDF WNQQQYSNST EMVMMSDINV PSNLNQQQQP IPLPKPNKPK VQPSRMFSCL 60 YCSRKFCTSQ ALGGHQNAHK RERAASRRTM FPVTGTDSDD RNMVHFHFLQ NNNNNNEKQL 120 EPSLNNYPLM TGQMLPEQNS IDINGNINHT NTTYSYNPYA NYCRGQLQTP ASNNINVFNP 180 FSSSDVYHPP PVPSLGLGGH HVYFTGGDAT LSTAQDLSSM DNHQLNLDLT LRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14010.1	6e-15	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT07385