PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT07530
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 249aa    MW: 27223.2 Da    PI: 6.501
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT07530genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601231.5e-38391401101
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               +C aCk+lrrkC ++C++ap++ ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar++dPvyG+v++il+lqqq+++l+aela+++++
  OIT07530  39 PCGACKFLRRKCISGCIFAPHYGSDQgAARFAAVHKVFGASNVSKLLLHIPANRRHDAVVTITYEAQARLSDPVYGCVSTILALQQQVASLQAELAVVQTQ 139
               7***********************9989*********************************************************************9988 PP

    DUF260 101 l 101
               l
  OIT07530 140 L 140
               5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MDEPPSDGTS ENRRKGPGKR ATGAVEPLAS AALPASTAPC GACKFLRRKC ISGCIFAPHY  60
GSDQGAARFA AVHKVFGASN VSKLLLHIPA NRRHDAVVTI TYEAQARLSD PVYGCVSTIL  120
ALQQQVASLQ AELAVVQTQL INNRYAVENA LQTSQQQHHH LQQQQLHQEH HHIAILQPTY  180
SNNSSVSNNL INNINSANTF NSTAFDQLPD DTCATTVPNN SPSFDPIHQE DEEEEESHNP  240
IVFTNQMFH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.16e-57LBD family protein