PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT07590
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 663aa    MW: 75142.7 Da    PI: 6.138
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT07590genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.74.3e-1102856582374
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
               + lL++cA+a+ss d++ a++lL r+++++s++gd ++Rla+y+++AL+arl+++++  y  +++s+ s    ++ l+a+k+f  ++P+  +s++ aN+ I
  OIT07590 285 RGLLTQCAQAMSSYDTRTANELLMRIRQHSSSHGDGTERLAHYLANALEARLSSTGTASYTVFASSRIS---AAHILKAYKAFITACPFKLMSNIFANKYI 382
               679***************************************************888888888777777...999************************** PP

      GRAS 103 leavege..ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                + + g   +++HiiDf+i +G+QWp+L+q+L++ ++g p +lRiTgv+ p++g   +e++e tg+rL+k++++++vpfefn+ +ak++e+++leeL++++
  OIT07590 383 KKLITGGapRTIHIIDFGILYGFQWPCLIQSLSALSRGEPiKLRITGVELPQPGfrPAERVEDTGRRLKKYCDRFNVPFEFNA-IAKKWESITLEELAINR 482
               ****998899***********************99977777************9*****************************.7**************** PP

      GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
               +E+l+Vn+ ++l +++de+v  +s+rd vL+l+++++P+++++   +  +n++ Fl+rf eal ++s+lfd++ea++pre+e+r+  E+e+++r+++nv+a
  OIT07590 483 DEVLVVNSLYRLGNIPDETVVPTSPRDVVLDLIRRIRPDMFIHGVVNGTYNTPFFLTRFREALFHFSTLFDMFEATMPREDEDRKLFEEEVFARDAMNVIA 583
               ***************************************************************************************************** PP

      GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               ceg+er+er et+++W+ r  +aGFk++pl++++++ ++  +r+ + + ++v+e+s+++++gWk+r ++++S+W+
  OIT07590 584 CEGTERVERPETYKQWQLRCARAGFKQLPLDQEIVNFVSNKVRREYHKDFSVDEDSQWMLQGWKGRVVYALSCWK 658
               *********************************************9888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    
MEAIFQEQLF PGADAFIFRH PSSSILVDPR EDHVVQNGTI VNRHSFEDYS HVHSNVSVPI  60
VRDGDSSPKE EGEREGEGEG EGEGEGDHSD AMYKYISQML MEEEDLEYKP CMFHDCMALQ  120
AAEKYFSDVL HGSENITNSP QFSAIIPQDK DSSSCPDFSN SSSDSIESPQ SDLRLESIIS  180
MKSLSVVSNG LNHGSLLTSF HSPSGLREKK NHHRQDDDHQ RSNKQLATFA ADESEPLEMY  240
DNVLLLCPNN PCVPPNEVKK PTKVGRPRSG GKKHSSSKKE IVDLRGLLTQ CAQAMSSYDT  300
RTANELLMRI RQHSSSHGDG TERLAHYLAN ALEARLSSTG TASYTVFASS RISAAHILKA  360
YKAFITACPF KLMSNIFANK YIKKLITGGA PRTIHIIDFG ILYGFQWPCL IQSLSALSRG  420
EPIKLRITGV ELPQPGFRPA ERVEDTGRRL KKYCDRFNVP FEFNAIAKKW ESITLEELAI  480
NRDEVLVVNS LYRLGNIPDE TVVPTSPRDV VLDLIRRIRP DMFIHGVVNG TYNTPFFLTR  540
FREALFHFST LFDMFEATMP REDEDRKLFE EEVFARDAMN VIACEGTERV ERPETYKQWQ  600
LRCARAGFKQ LPLDQEIVNF VSNKVRREYH KDFSVDEDSQ WMLQGWKGRV VYALSCWKPA  660
QQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-167GRAS family protein