PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT07675

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 413aa MW: 45308.2 Da PI: 8.7921

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT07675	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.4e-06	168	191	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y Cp Cg++F+ ++L++H+ + H OIT07675 168 YACPECGEVFPKIESLEHHQAVrH 191 89******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MAHFTFLPEA SEIQKQPLKR RKKQPSSWDQ FKNLLSCKQI ENSTVHDSSK NPTAAAYYSK 60 LGSCSSICSF KDVVLHHGNN TRVVHIADDN TNNSLEDQSS STLGQETRLL SKKTSYGSTS 120 SRSFGSSTRS NGSTTTSRGM QFRKLSGCYE CHMIVDPSRY PVPRSTIYAC PECGEVFPKI 180 ESLEHHQAVR HAVSELGPED SSRNIVEIIF KSSWLKKDNP ICKIERILKV HNTKRTIHKF 240 EDYRDAVKLR ATVNGKKNPR CAADGNELLR FYCTTLTCSL GPKGTSNLCS SVCTPGCGVC 300 TIIRHGFQGN NNKVCGVRTT AGSGRAHDCL GGGGDGRRAM LVCRVIAGRV KRVAEDAAAT 360 EEESGGSGLS AAGNFYDSVV GYSDIYSNLE ELYVFNPRAI LPCFVVIYKA LES

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MAHFTFLPEA SEIQKQPLKR RKKQPSSWDQ FKNLLSCKQI ENSTVHDSSK NPTAAAYYSK  60
LGSCSSICSF KDVVLHHGNN TRVVHIADDN TNNSLEDQSS STLGQETRLL SKKTSYGSTS  120
SRSFGSSTRS NGSTTTSRGM QFRKLSGCYE CHMIVDPSRY PVPRSTIYAC PECGEVFPKI  180
ESLEHHQAVR HAVSELGPED SSRNIVEIIF KSSWLKKDNP ICKIERILKV HNTKRTIHKF  240
EDYRDAVKLR ATVNGKKNPR CAADGNELLR FYCTTLTCSL GPKGTSNLCS SVCTPGCGVC  300
TIIRHGFQGN NNKVCGVRTT AGSGRAHDCL GGGGDGRRAM LVCRVIAGRV KRVAEDAAAT  360
EEESGGSGLS AAGNFYDSVV GYSDIYSNLE ELYVFNPRAI LPCFVVIYKA LES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-147	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT07675