PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT07681

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 233aa MW: 27089.8 Da PI: 9.9391

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT07681	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.1	2.3e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n+s rqvtfskRrng+lKKA+EL +LCda+v +iifsstgklye+s+ OIT07681 10 RIDNSSSRQVTFSKRRNGLLKKAKELAILCDAQVGLIIFSSTGKLYEFSN 59 8***********************************************95 PP
2	K-box	80.2	4.9e-27	81	170	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++ +++q+e+a L++++++Lq+++R+++Ge+L L++k+Lq+Le++Le+s++ iR+kK+++l+++i+el k +++en +L +k+ OIT07681 81 NPVSELKYWQKEAAMLRQQLQELQQNHRQVMGEQLYGLTIKDLQNLENRLETSIRGIRTKKEQILHDEIQELSWKGSLMHQENLELVEKV 170 5567899*******************************************************************************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MGRGKIVIRR IDNSSSRQVT FSKRRNGLLK KAKELAILCD AQVGLIIFSS TGKLYEFSNA 60 SVKSIVERYN KTKDEHHQLH NPVSELKYWQ KEAAMLRQQL QELQQNHRQV MGEQLYGLTI 120 KDLQNLENRL ETSIRGIRTK KEQILHDEIQ ELSWKGSLMH QENLELVEKV NIIQQENVDL 180 YKKAFGTRDA NEVNGNSTTP YYFTISREVH APIHLQLSQP EPHNFARVVS NQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	2e-91	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT07681