PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT07707

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 216aa MW: 25485.9 Da PI: 6.0671

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT07707	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.8	1.1e-19	55	108	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq+++Le+ Fe+++++ +e++ +LA++lgL+ qV vWFqNrRa++k+ OIT07707 55 KRKLSEEQVNVLEQSFEEEHKLETERKDKLASELGLDSHQVAVWFQNRRARYKN 108 45899***********************************************95 PP
2	HD-ZIP_I/II	112.6	2.6e-36	54	145	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eqv++LE+sFeee+kLe+erK +la+eLgl+ +qvavWFqnrRAR+k+k+lE++y++Lk+++d+ e++rLe+ev +++e+l++ OIT07707 54 RKRKLSEEQVNVLEQSFEEEHKLETERKDKLASELGLDSHQVAVWFQNRRARYKNKKLEEEYSKLKTEHDTAIVEKCRLENEVIKMKEQLSK 145 8***************************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MKSSMTHQID DQMVLISQYY PDIYTQLVSE PGEAKPRRRR KKNKGEGSSC GFMRKRKLSE 60 EQVNVLEQSF EEEHKLETER KDKLASELGL DSHQVAVWFQ NRRARYKNKK LEEEYSKLKT 120 EHDTAIVEKC RLENEVIKMK EQLSKKENEI QKLLLERNCD GVSSNSPIST SSFTMDQPPF 180 LWEFGMEGML MDNLFFVAEN TYNYHEGLEW VNPIYI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	56	RRRRKKNKGEGSSCGFMRKR
2	37	57	RRRRKKNKGEGSSCGFMRKRK
3	38	57	RRRRKKNKGEGSSCGFMRKR
4	38	58	RRRRKKNKGEGSSCGFMRKRK
5	39	59	RRRRKKNKGEGSSCGFMRKRK
6	40	60	RRRRKKNKGEGSSCGFMRKRK
7	54	83	RKRKLSEEQVNVLEQSFEEEHKLETERKDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	5e-69	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OIT07707