PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT07717

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 143aa MW: 16600 Da PI: 10.2926

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT07717	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.5	2.4e-16	14	60	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed +l v+++G ++W+ +++ g+ R++k+c+ rw + OIT07717 14 KGAWSEDEDNKLRAFVEKHGHPNWRQLPKYAGLMRCGKSCRQRWMNN 60 79******************************************997 PP
2	Myb_DNA-binding	48.8	1.6e-15	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ + eE+el+++++++lG++ W++Ia+++ gR+++++k+ w+ + OIT07717 67 KGNYSLEEEELIIKLHNELGNR-WSAIAEKLL-GRSDNDIKNQWHAH 111 7899****************.****9.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence
MVRTPSVDKN GMKKGAWSED EDNKLRAFVE KHGHPNWRQL PKYAGLMRCG KSCRQRWMNN 60 LRPGLKKGNY SLEEEELIIK LHNELGNRWS AIAEKLLGRS DNDIKNQWHA HLKKCANVNT 120 NSSTSTEFDN LLIKFHNMKL TVI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16490.1	4e-51	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT07717