PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT07914

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 525aa MW: 59755.5 Da PI: 8.4298

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT07914	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0016	457	479	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp C++ F++ L H r+H OIT07914 457 HKCPFCPRIFKSGQALGGHKRSH 479 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MEEDQDMKFV CKLCNKRYPC GKSLGGHMRS HEFEENFEAK LKKVQSWSTI NGKNFKRENQ 60 SKLELGGVST YGLRENPKKT WRAEDSNSPL PQEKVCQQCG KVFQSMKALC GHMACHSEKD 120 KGGLNLKDDN SWSSESNSDT EAEELLSPKC RSKAKRYKKI IVKSSISKVN NNYNCSSSVS 180 EIDHEQEQEE VAKCLMLLSR DSGIWNGVNS VVESSDNNSI VLETKSSSND MRNARNNSLK 240 CVYNQGEQPR TMKKEDRNLE RDMLDAETQS ENSDSDYFLG ENGKVDSDGS VERFRGNGNC 300 KWSTSKLSLG AWLDERRNDE KKCLNRTKRY LTESRKDLST KYEHDGYGLT SNFDKCESRK 360 GTTDRHKKRK YECLNCKKTF SSYQALGGHR PCHKKINDYS ESTYETGENT LGADNDTKCI 420 NISKHKETYS NKKPAVSTQD VPYEPGKKVK PKKSKGHKCP FCPRIFKSGQ ALGGHKRSHF 480 IHANVSEENF NQSSAVKREV ADLLDLNLPA PVDDEEDEHA RFMSW

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MEEDQDMKFV CKLCNKRYPC GKSLGGHMRS HEFEENFEAK LKKVQSWSTI NGKNFKRENQ  60
SKLELGGVST YGLRENPKKT WRAEDSNSPL PQEKVCQQCG KVFQSMKALC GHMACHSEKD  120
KGGLNLKDDN SWSSESNSDT EAEELLSPKC RSKAKRYKKI IVKSSISKVN NNYNCSSSVS  180
EIDHEQEQEE VAKCLMLLSR DSGIWNGVNS VVESSDNNSI VLETKSSSND MRNARNNSLK  240
CVYNQGEQPR TMKKEDRNLE RDMLDAETQS ENSDSDYFLG ENGKVDSDGS VERFRGNGNC  300
KWSTSKLSLG AWLDERRNDE KKCLNRTKRY LTESRKDLST KYEHDGYGLT SNFDKCESRK  360
GTTDRHKKRK YECLNCKKTF SSYQALGGHR PCHKKINDYS ESTYETGENT LGADNDTKCI  420
NISKHKETYS NKKPAVSTQD VPYEPGKKVK PKKSKGHKCP FCPRIFKSGQ ALGGHKRSHF  480
IHANVSEENF NQSSAVKREV ADLLDLNLPA PVDDEEDEHA RFMSW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	1e-55	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT07914