PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT07928

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GATA

Protein Properties

Length: 110aa MW: 12087.2 Da PI: 10.3837

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT07928	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	60.1	2.9e-19	17	51	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs C+tt TplWR+gp g+k+LCnaCG++y kk++ OIT07928 17 CSDCHTTRTPLWRSGPAGPKSLCNACGIKYNKKRR 51 ********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence
MDLKEVKGSE VEEMKTCSDC HTTRTPLWRS GPAGPKSLCN ACGIKYNKKR RQLLGLDKGR 60 SDKGKKKRKI SGEKNGQSLK MKLMALGGKL REEEQAAVLL MALSCGSVYA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	69	KKRRQLLGLDKGRSDKGKKKRK
2	49	70	KKRRQLLGLDKGRSDKGKKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49300.1	1e-22	GATA family protein

Link Out ? help Back to Top
Ensembl	OIT07928