PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT08048
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18205.7 Da    PI: 5.3912
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT08048genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.26e-20957149
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              krie+k +r++tf+kRr+g++KKA+EL   Cda++avi fs  g+++ +
  OIT08048  9 KRIEDKAKRHTTFTKRRQGLFKKAKELAKRCDAQAAVITFSLAGNVFAF 57
              79******************************************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MVRTKLEIKR IEDKAKRHTT FTKRRQGLFK KAKELAKRCD AQAAVITFSL AGNVFAFGHP  60
SVDDVVNRYI AATSAPEGNE IPVHKEAEKK DKDVVIENNV DQEDEETTSF ELPVGDMGMD  120
ELEQFEVAMV EMKKKVVDRI NGIISNSKYE DLGSPYTGLT LN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.12e-19M-type_MADS family protein